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HB3114: Ocean acidification and hypoxia monitoring at Yaquina Bay
Research Team:
• Bob Cowen (PI), Hatfield Marine Science Center (HMSC), Oregon State University
Project Partners:
• Dr. Drummond Biles, iLab Manager, HMSC, Oregon State University
• Dr. Eric Rehm, Senior Oceanographer, Sea-Bird Scientific
• Dr. Andrew Barnard, Chief Technology Officer, Sea-Bird Scientific
• Dr. Jan Newton, NANOOS Executive Director, University of Washington
• Dr. Shawn Rowe, Associate Professor, Oregon State University
• Kristen Peterse, Associate Director, Milne Computer Center, Oregon State University
• Cinamon Moffett, Research Program Manger, HMSC, Oregon State University
Project Objectives:
• OAH instruments in the HMSC Climate Monitoring station will collect climate-grade temperature, salinity, dissolved oxygen, turbidity, conductivity, total algae, Nitrate, chlorophyll a, CDOM, pCO2, and TCO2 time-series data from Yaquina Bay, Oregon that will be shared near real-time and via a public exhibit in the Sea Grant Visitor Center at HMSC.
Project Timeline: March 2022 to December 2025
Project Award: $97,497
Final Report: Hatfield Marine Science Center Coastal Monitoring Station (https://0e48c232-d318-49c6-a0f9-4cbf7ce8886e.usrfiles.com/ugd/0e48c2_89e8afb7e57e472d94a422107782c1ed.pdf)
Executive Summary: The Coastal Monitoring Station (CMS) at Oregon State University’s Hatfield Marine Science Center (HMSC) began collecting and transmitting real-time, climate-grade water quality data to a public website in April 2025. Measurements at the estuary dock site have been ongoing since 1988, but funding for support has been sporadic. In 2021, the Oregon legislature allocated funds to enhance ocean acidification and hypoxia (OAH) monitoring. The CMS is a direct result of that funding, administered by the Oregon Ocean Science Trust.
The CMS located in Yaquina Bay, Oregon, includes core in situ and benchtop sampling instruments, as well as an innovation test berth. The station is designed to be modular; it began with physical, chemical, and biological water sampling instruments, and a weather package is being installed in winter 2025-26. The system's data logging and visualization infrastructure is based on a system used by the University-National Oceanographic Laboratory System (UNOLS). framework. The CMS is part of HMSC’s broader effort to increase public engagement with water quality issues through the real-time data website, a time series database, and a new public exhibit at the Hatfield Sea Grant Visitor Center. Researchers, resource managers, and the general public benefit from access to the data, which are also published to public repositories like ERDDAP. The CMS addresses critical OAH data gaps in the Yaquina estuary by providing a highly accurate and stable long-term data collection system. HMSC is committed to supporting this cost-effective and sustainable monitoring system for Yaquina Bay.
Figure 1.
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The instrument frame is deployed about 1m above the estuary floor.
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The Burke-o-later (BOL) installed in the CMS. This instrument makes high resolution measurements of the carbonate system, incorporating temperature and salinity measurements.
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A screenshot of the CMS real-time data. The publicly accessible real-time CMS data website (https://hmsc-cms.dri.oregonstate.edu/plots/flowthrough/) ((https://hmsc-cms.dri.oregonstate.edu/plots/flowthrough/))went live in April 2025.
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On 29 July 2025, a magnitude 8.8 earthquake occurred offshore of the Kamchatka peninsula in Russia, the largest on earth since the 2011 Mw 9.1 earthquake in Tohoku, Japan (USGS, 2025). The Newport, OR area went under a distant tsunami advisory, and the resulting water level fluctuation inside the Yaquina estuary was 6 inches. The CMS live data feed displayed the first wave to reach the HMSC dock at about 07:30 UTC (00:30 PST), as well as the resulting increases in turbidity, scattering and fluorescent dissolved organic matter (FDOM)CMS depth (tide), scattering, turbidity and FDOM, 29-30 July 2025.
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In early December 2025, a series of at least 3 atmospheric rivers began impacting Western Washington and Oregon, leading to historic flooding, landslides and record river levels. For several days, the HMSC facilities team wasn’t able to pump water to the seawater system as its salinity wasn’t high enough even during high tide. An initial analysis revealed that turbidity levels were twice baseline levels, even during high tide when the sediment-rich riverine signal is usually much weaker. This graphic illustrates an initial analysis of CMS turbidity and tide data, November-December 2025.
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The Hatfield CMS website (https://hmsc.oregonstate.edu/research-support/coastal-monitoring-station) ((https://hmsc.oregonstate.edu/research-support/coastal-monitoring-station))went live in May 2025 with links to the real-time data, descriptions of the instruments, and a narrative of the project. Hatfield staff continue work with Sea Grant K-12 educators to create short videos and other content to engage website users and increase data literacy. The website will feature a web-based version of the exhibit video game and a link to the estuary floor webcam.
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The CMS exhibit with live data streaming and instrument frame replica.